TaqMan (single-plex) SNP and CNV genotyping are available with a daily through-put of 20,000 genotypes per day. We recommend Taqman for projects with 1 to 20 SNPs.
The Sequenom (plexrate: < 40 SNPs) genotyping technology is our method of choice for high throughput genotyping of custom SNPs. This technology is an array-based methods which is able to type up to 384 samples in one step.
The Illumina iScan system is capable of processing of various genotyping- and methylation arrays (plexrate: 384 to 2.5 Mio. SNPs). This allows for genome-wide and targeted genotyping and methylation approaches in a high throughput manner.