Facts & Details: 

HLAssign download

Free software for HLA typing from targeted NGS data

HLAssign assigns known haplotypes to next-generation sequencing data from appropriate targeted enrichment panels (two analysis modes: PCR based, capture-based), allowing interactive quality control, manual selection of alternative haplotypes, and generation of a report in PDF or CSV format.

Please visit this homepage regularly for the latest software version.

Disclaimer: HLAssign is for research only. HLAssign is currently provided free of charge, but you are required to read our disclaimer and to cite us when publishing results.

Current version: v0.3.0 (released 8 June 2023), IMGT/HLA v3.30.0


Mac version

Windows version

Tutorial beta 0.2

Example data > coming soon


HLAssign © Copyright The HLAssign developers 2016-2023.