Genome Wide Transcriptome Analysis

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Facts & Details: 
  1. Genome wide transcriptome analysis, sequencing based

Technology / platform:

Illumina HiSeq and others

Setup options:       

full transcriptome, coverage depending on technology applied

multiplexing up to 96 samples

Sample requirements:     

100-500 ng quality controlled total RNA

Estimated costs:         

300-600 €/sample, depending on technology applied / multiplexing

Estimated timeline:  

depending on queue; processing wetlab: 4 weeks; analysis: 6 weeks

 

       2. Genome wide transcriptome analysis, array based

Technology / platform:

Affymetrix GeneChip

Setup options:       

Human Gene 2.0 st (2013: 45 000 transcripts)

 

Human Gene 1.0 st (2010: 29 000 transcripts)

 

HG-U133 Plus 2.0  (2004: 55 000 transcripts)

 

miRNA 2.0 (2012: 20 000 transcripts)

 

miRNA 1.0  (2009: 08 000 transcripts)

 

Mouse Gene 2.0 st (2013: 34 000 transcripts)

 

Mouse Gene 1.0 st (2009: 29 000 transcripts)

 

Mouse 430 2.0

Sample requirements:     

100 ng quality controlled total RNA

Estimated costs:         

397 €/sample

Estimated timeline:  

depending on queue; processing wetlab: 2 weeks; analysis: 2 weeks