Software

Facts & Details: 

The bioinformatics group of the ICMB has developed several programs, which are available for free download. You can find further information about the projects in bioinformatics at the ICMB under Technologies/Bioinformatics.

CNVineta
a data mining tool for large case-control copy number variation data sets

DRBTool
supports a new technique for determining HLA genotypes at the DRB1 locus

Entropy
uses an EM algorithm for haplotype frequency estimation

Genomizer
analyses genome wide association experiments

GMFilter
improves GeneMapper® analysis by removing bad wells

Imputation Benchmarking
a comprehensive evaluation of SNP genotype imputation

InSNP
detects substitution and indel SNPs in sequencing traces

LIMS Tools
includes AssayManager, OrderTool and ProjectManager

LTRharvest
de novo detection of LTR retrotransposons

MFG Tools
includes GenoTool, PatientTool and SampleTool

POPSIM
a population simulation program

T-ACE
Transcriptome Analysis and Comparison Explorer

SGCaller
calls genotypes in sequencing traces

SNPSelection
selects a marker set for a genome-wide association study

SNPSplicer
analyses SNP-dependent splicing in genotyped cDNAs

SXTestPlate
analyses the genotypes of a SNPlex™ control plate