Prev Next

Mapping

This tab allows to display the mapping of the reads of a contig or the mapping of the blast results of a query sequence. If the 'Blast'-tab is raised the first query sequence and its blast results will be mapped, otherwise the selected contig and its reads will be mapped.
The left half of the 'Mapping'-tab contains a table which lists all reads/blast-results associated with the mapped contig/blast-query. When selecting a row of the list the accordant reads/blast-results sequence will be shown in the right half of the tab, if the 'sequence'-radiobutton is selected. The selection also highlights the reads/blast-results in the mapping window.

[picture]


When the 'distribution'-radiobutton is selected a table appears in the right half of the tab. This table shows the read distribution of the contig. Through the rightmenu the reads of a single run can be exported.

[picture]


The mapping window only opens if the 'Map'-option of the 'Mapping'-tab is checked. It displays the reference sequence (contig/blast-query) as a yellow bar. The hit sequences (reads/blast-results) are displayed in green or in various colors, depending on the color setting for the runs in the 'Database info'-tab. Regions of the hit sequences, that do not match to the reference, are shown in gray.
At the bottom of the mapping window the reference sequence is shown. By clicking on a hit bar the accordant sequence will appear under the reference sequence.

[picture]


Prev Next