The IKMB actively develops and maintains a broad range of bioinformatics software projects, most of which are hosted on GitHub. GitHub is a code-sharing platform with advanced features for collaborative development, issue tracking and integration with downstream platforms such as DockerHub or Jira . Please visit our GitHub page for a full list of projects. We strongly support open science, open software and always welcome contributions and feature requests.

Some of our most popular repositories:

  • TOFU-MAaPO: the IKMB metagenomics pre-processing workflow
  • Deepvariant: the IKMB whole-genome analysis workflow
  • EagleImp: an optimization of the original Eagle package for genotype imputation
  • MAGScoT: a novel tool for scoring and refining of metagenomic bins

Contact: Georg Hemmrich-Stanisak